BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003A12SP1|AL425063
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig543 1535 0.0
>3x_Contig543
Length = 2970
Score = 1535 bits (774), Expect = 0.0
Identities = 808/815 (99%), Gaps = 5/815 (0%)
Strand = Plus / Plus
Query: 153 gatccatttacgggagactaattggccatatgatgcgcttatccagctcgtatatccaag 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gatccatttacgggagactaattggccatatgatgcgcttatccagctcgtatatccaag 69
Query: 213 gtaattgacatgaagatagtttttcctggtaataattagcatcaacattgcaacatagaa 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gtaattgacatgaagatagtttttcctggtaataattagcatcaacattgcaacatagaa 129
Query: 273 agataatatttttactggccataacagtaatttctgagatttcgacaactcccattgtgt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agataatatttttactggccataacagtaatttctgagatttcgacaactcccattgtgt 189
Query: 333 cgtaatggttgtaattaaaccgacaagtaccgctgttttgaagagtaaacccctggcgaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cgtaatggttgtaattaaaccgacaagtaccgctgttttgaagagtaaacccctggcgaa 249
Query: 393 attattaaacctgctcttgcataccccactgaatatccgatggtaagtaaaacgagaatc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attattaaacctgctcttgcataccccactgaatatccgatggtaagtaaaacgagaatc 309
Query: 453 acgcagttgcggtgcaaccggntcctaaactctgcacgtaagacatcaatgaaaacaaac 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acgcagttgcggtgcaaccgg-tcctaaactctgcacgtaagacatcaatgaaaacaaac 368
Query: 513 caatcaaagatgaacacaggtaaaagtacagcctgtatagcaataagctgagtaatttta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caatcaaagatgaacacaggtaaaagtacagcctgtatagcaataagctgagtaatttta 428
Query: 573 gatgcttaaaacagacaaaggtcaattggactttaggacaatcaattaccttccgagtta 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gatgcttaaaacagacaaaggtcaattggactttaggacaatcaattaccttccgagtta 488
Query: 633 cttatattatttatttgtatatcatctcaagcattttaagttcttaacaggttgtgatct 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttatattatttatttgtatatcatctcaagcattttaagttcttaacaggttgtgatct 548
Query: 693 agagatcaggcgtcataaaaaaattagatattcgggtaaccctcttatgccaatgtcata 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agagatcaggcgtcataaaaaaattagatattcgggtaaccctcttatgccaatgtcata 608
Query: 753 gttgatttgcatggtaactcgaaactaaagacaatcacctccttgtcagtgaggtcagtc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gttgatttgcatggtaactcgaaactaaagacaatcacctccttgtcagtgaggtcagtc 668
Query: 813 tcaacatatagacgctaaacgcgaacctgatgatatcgtaaacagttgttacatgtaaat 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcaacatatagacgctaaacgcgaacctgatgatatcgtaaacagttgttacatgtaaat 728
Query: 873 aagtaaatcaactaaatatgtgtcatattctctttctctttcttgtaac-atggtctcgt 931
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 729 aagtaaatcaactaaatatgtgtcatattctctttctctttcttgtaacaatggtctcgt 788
Query: 932 gtc-actttaacgct--aaaaktgatattcttgtc 963
||| ||||||||||| ||| |||||||||||||
Sbjct: 789 gtcaactttaacgcttaaaagttgatattcttgtc 823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7060
Number of Sequences: 1807
Number of extensions: 7060
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)